Basic Research in Informatics for Creating the Knowledge Society
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RESEARCH: PROJECTS
Click on a theme or a project in the table below for more information.
ThemesPDCMSVISAFM
ProjectsPDC1    PDC2    PDC3MSV1    MSV2    MSV3IS1    IS2    IS3    IS4/5
IS6    IS7    IS8
AFM1    AFM2    AFM3    AFM4
AFM5    AFM6    AFM7    AFM8

Subproject AFM2.3: Numerical Algorithms for Bio-informatics
Subproject leader
Drs. J.G. Blom (CWI)

Research description
A great diversity of phenomena in earth and life sciences is modeled by partial differential equations (PDEs). These equations take into account processes like competition (bio-chemical reactions between competing species), transport of species through media (flow by advection and diffusion), taxis (reflex movement of species by external stimulation), biomechanical phenomena (elasticity), etc. The PDEs can take different forms, but generically appear as complex systems containing a hyperbolic part (advection), a parabolic part (diffusion), ordinary differential equations (chemical reactions), and additional terms that are specific for the application at hand. For implementing these complex PDE models in simulation packages, the main and first requirement is to have reliable, easy-to-use and efficient numerical algorithms at one’s disposal.

This comprises the general aim of this project which is twofold:

  • to develop and analyze novel numerical algorithms for novel biological models
  • to implement these algorithms in software packages for computational biologists

Associate partners

AFM2.3 Researchers funded by BRICKS

  • Ms.drs. J.G. Blom (CWI)
  • Dr. B.P. Sommeijer (CWI)
  • Prof.dr. J.G. Verwer (CWI)
  • Prof.dr. A. Doelman (CWI)
  • Dr. M. Peletier (TU/e)
  • Dr.ir. J. Frank (CWI)

For more information, please refer to the publications and posters of this project.


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